{ "_id": "6a16cac6acfb0bcc41d89880", "Package": "Nonpareil", "Title": "Metagenome Coverage Estimation and Projections for 'Nonpareil'", "Type": "Package", "Version": "3.5.3", "Authors@R": "c(person(\"Luis M.\",\"Rodriguez-R\",role=c(\"aut\",\"cre\"),\nemail=\"lmrodriguezr@gmail.com\"))", "Author": "Luis M. Rodriguez-R [aut, cre]", "Maintainer": "Luis M. Rodriguez-R ", "Description": "Plot, process, and analyze NPO files produced by\n'Nonpareil' .", "URL": "http://enve-omics.ce.gatech.edu/nonpareil/", "License": "Artistic-2.0", "LazyLoad": "yes", "Encoding": "UTF-8", "RoxygenNote": "7.3.1", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-27 10:40:26 UTC", "User": "root" }, "Repository": "https://lmrodriguezr.r-universe.dev", "Date/Publication": "2024-06-29 02:41:37 UTC", "RemoteUrl": "https://github.com/cran/Nonpareil", "RemoteRef": "HEAD", "RemoteSha": "f0ee9d5563e8b89db0a9ed2d56656e4f271abb9c", "MD5sum": "a2d5a4026dd68bad45ddcc4c9921e64d", "_user": "lmrodriguezr", "_type": "src", "_file": "Nonpareil_3.5.3.tar.gz", "_fileid": "d29457f5a796bb3b66721f45b61ff776f6380076cbdde5d7d0a35a3bd6a782d2", "_filesize": 138453, "_sha256": "d29457f5a796bb3b66721f45b61ff776f6380076cbdde5d7d0a35a3bd6a782d2", "_created": "2026-05-27T10:40:26.000Z", "_published": "2026-05-27T10:43:18.035Z", "_distro": "noble", "_jobs": [ { "job": 78059293368, "time": 99, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7238301093" }, { "job": 78059293253, "time": 98, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7238300333" }, { "job": 78059293169, "time": 137, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7238302768" }, { "job": 78059293158, "time": 108, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7238297573" }, { "job": 78058938634, "time": 138, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7238269506" }, { "job": 78059293447, "time": 78, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7238294605" }, { "job": 78059293272, "time": 105, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7238302970" }, { "job": 78059293232, "time": 56, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7238287804" }, { "job": 78059293291, "time": 53, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7238288568" } ], "_buildurl": "https://github.com/r-universe/lmrodriguezr/actions/runs/26506135165", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/Nonpareil", "_commit": { "id": "f0ee9d5563e8b89db0a9ed2d56656e4f271abb9c", "author": "Luis M. Rodriguez-R ", "committer": "cran-robot ", "message": "version 3.5.3\n", "time": 1719628897 }, "_maintainer": { "name": "Luis M. Rodriguez-R", "email": "lmrodriguezr@gmail.com", "login": "lmrodriguezr", "twitter": "@_lrr_", "description": "", "uuid": 12363 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.9", "role": "Depends" }, { "package": "methods", "role": "Imports" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "lmrodriguezr", "count": 7, "uuid": 12363 } ], "_userbio": { "uuid": 12363, "type": "user", "name": "Luis M Rodriguez-R" }, "_downloads": { "count": 235, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/Nonpareil" }, "_mentions": 33, "_searchresults": 52, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/Nonpareil.html", "manual.pdf" ], "_realowner": "lmrodriguezr", "_cranurl": false, "_releases": [ { "version": "3.3", "date": "2017-12-05" }, { "version": "3.3.1", "date": "2018-03-22" }, { "version": "3.3.2", "date": "2018-07-23" }, { "version": "3.3.3", "date": "2018-10-22" }, { "version": "3.3.4", "date": "2019-02-01" }, { "version": "3.4.0", "date": "2022-01-28" }, { "version": "3.5.3", "date": "2024-06-28" } ], "_exports": [ "Nonpareil.add.curve", "Nonpareil.antif", "Nonpareil.col", "Nonpareil.coverage_factor", "Nonpareil.curve", "Nonpareil.curve.batch", "Nonpareil.f", "Nonpareil.fit_model", "Nonpareil.legend", "Nonpareil.read_data", "Nonpareil.read_metadata", "Nonpareil.set", "plot.Nonpareil.Curve", "plot.Nonpareil.Set", "predict.Nonpareil.Curve", "print.Nonpareil.Curve", "print.Nonpareil.Set", "summary.Nonpareil.Curve", "summary.Nonpareil.Set" ], "_help": [ { "page": "plus-Nonpareil.Set-ANY-method", "title": "Alias of 'Nonpareil.add.curve'.", "topics": [ "+,Nonpareil.Set,ANY-method" ] }, { "page": "cash-Nonpareil.Curve-method", "title": "Get attribute.", "topics": [ "$,Nonpareil.Curve-method" ] }, { "page": "cash-Nonpareil.Set-method", "title": "Get attribute.", "topics": [ "$,Nonpareil.Set-method" ] }, { "page": "cash-set-Nonpareil.Curve-method", "title": "Set attribute.", "topics": [ "$<-,Nonpareil.Curve-method" ] }, { "page": "cash-set-Nonpareil.Set-method", "title": "Set attribute.", "topics": [ "$<-,Nonpareil.Set-method" ] }, { "page": "Nonpareil", "title": "Nonpareil: Metagenome Coverage Estimation and Projections for 'Nonpareil'.", "topics": [ "Nonpareil-package", "Nonpareil" ] }, { "page": "Nonpareil.add.curve", "title": "Adds a 'Nonpareil.Curve' to a 'Nonpareil.Set'.", "topics": [ "Nonpareil.add.curve" ] }, { "page": "Nonpareil.antif", "title": "Complement function of 'Nonpareil.f'.", "topics": [ "Nonpareil.antif" ] }, { "page": "Nonpareil.col", "title": "Returns the color of the curve.", "topics": [ "Nonpareil.col" ] }, { "page": "Nonpareil.coverage_factor", "title": "Factor to transform redundancy into coverage (internal function).", "topics": [ "Nonpareil.coverage_factor" ] }, { "page": "Nonpareil.curve", "title": "Generates a Nonpareil curve from an .npo file", "topics": [ "Nonpareil.curve" ] }, { "page": "Nonpareil.Curve-class", "title": "A single Nonpareil curve. This object can be produced by 'Nonpareil.curve' and supports S4 methods 'plot', 'summary', 'print', and 'predict'. For additional details, see help for 'summary.Nonpareil.Curve'.", "topics": [ "Nonpareil.Curve-class" ] }, { "page": "Nonpareil.curve.batch", "title": "Alias of 'Nonpareil.set'.", "topics": [ "Nonpareil.curve.batch" ] }, { "page": "Nonpareil.f", "title": "Function of the projected model.", "topics": [ "Nonpareil.f" ] }, { "page": "Nonpareil.fit_model", "title": "Fit the sigmoidal model to the rarefied coverage.", "topics": [ "Nonpareil.fit_model" ] }, { "page": "Nonpareil.legend", "title": "Generates a legend for Nonpareil plots.", "topics": [ "Nonpareil.legend" ] }, { "page": "Nonpareil.read_data", "title": "Read the data tables and extract direct estimates.", "topics": [ "Nonpareil.read_data" ] }, { "page": "Nonpareil.read_metadata", "title": "Read the metadata headers.", "topics": [ "Nonpareil.read_metadata" ] }, { "page": "Nonpareil.set", "title": "Generates a collection of Nonpareil curves (a 'Nonpareil.Set' object) and (optionally) plots all of them in a single canvas.", "topics": [ "Nonpareil.set" ] }, { "page": "Nonpareil.Set-class", "title": "Collection of 'Nonpareil.Curve' objects. This object can be produced by 'Nonpareil.curve.batch' and supports S4 methods 'plot', 'summary', and 'print'.", "topics": [ "Nonpareil.Set-class" ] }, { "page": "plot.Nonpareil.Curve", "title": "Plot a 'Nonpareil.Curve' object.", "topics": [ "plot.Nonpareil.Curve" ] }, { "page": "plot.Nonpareil.Set", "title": "Plot a 'Nonpareil.Set' object.", "topics": [ "plot.Nonpareil.Set" ] }, { "page": "predict.Nonpareil.Curve", "title": "Predict the coverage for a given sequencing effort.", "topics": [ "predict.Nonpareil.Curve" ] }, { "page": "print.Nonpareil.Curve", "title": "Prints and returns invisibly a summary of the 'Nonpareil.Curve' results.", "topics": [ "print.Nonpareil.Curve" ] }, { "page": "print.Nonpareil.Set", "title": "Prints and returns invisibly a summary of the 'Nonpareil.Set' results.", "topics": [ "print.Nonpareil.Set" ] }, { "page": "summary.Nonpareil.Curve", "title": "Returns a summary of the 'Nonpareil.Curve' results.", "topics": [ "summary.Nonpareil.Curve" ] }, { "page": "summary.Nonpareil.Set", "title": "Returns a summary of the 'Nonpareil.Set' results.", "topics": [ "summary.Nonpareil.Set" ] } ], "_rundeps": [], "_score": 2.7160033436347994, "_indexed": true, "_nocasepkg": "nonpareil", "_universes": [ "lmrodriguezr" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "3.5.3", "date": "2026-05-27T10:42:13.000Z", "distro": "noble", "commit": "f0ee9d5563e8b89db0a9ed2d56656e4f271abb9c", "fileid": "d70ec3f7bf44a312784ea32e565daaa3ddac87f48635b4ebf4a7367ed58d224a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/lmrodriguezr/actions/runs/26506135165" }, { "r": "4.6.0", "os": "linux", "version": "3.5.3", "date": "2026-05-27T10:42:12.000Z", "distro": "noble", "commit": "f0ee9d5563e8b89db0a9ed2d56656e4f271abb9c", "fileid": "7f7a0945e93c8b34ef30afdadb0a40df58210576e45105e21a09b71311d84efc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/lmrodriguezr/actions/runs/26506135165" }, { "r": "4.5.3", "os": "mac", "version": "3.5.3", "date": "2026-05-27T10:42:21.000Z", "commit": "f0ee9d5563e8b89db0a9ed2d56656e4f271abb9c", "fileid": "2f2989f371e75a33cb6e92886ea78f561ec88013a6f92680c95f529c4fe7cfa0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/lmrodriguezr/actions/runs/26506135165" }, { "r": "4.6.0", "os": "mac", "version": "3.5.3", "date": "2026-05-27T10:42:05.000Z", "commit": "f0ee9d5563e8b89db0a9ed2d56656e4f271abb9c", "fileid": "e4457703fb7a2ccd79e00813fdc83f69ff818769b0c07308c609f86509eace78", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/lmrodriguezr/actions/runs/26506135165" }, { "r": "4.6.0", "os": "wasm", "version": "3.5.3", "date": "2026-05-27T10:42:03.000Z", "commit": "f0ee9d5563e8b89db0a9ed2d56656e4f271abb9c", "fileid": "b54882eb1ac598414ddaaa4ce752423d451a01b72a2de30d94dbc82523221585", "status": "success", "buildurl": "https://github.com/r-universe/lmrodriguezr/actions/runs/26506135165" }, { "r": "4.7.0", "os": "win", "version": "3.5.3", "date": "2026-05-27T10:42:14.000Z", "commit": "f0ee9d5563e8b89db0a9ed2d56656e4f271abb9c", "fileid": "05f9090216812c1ed214c87085ecf8a338e7d910dba23a1d73b5fea6762af000", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/lmrodriguezr/actions/runs/26506135165" }, { "r": "4.5.3", "os": "win", "version": "3.5.3", "date": "2026-05-27T10:41:28.000Z", "commit": "f0ee9d5563e8b89db0a9ed2d56656e4f271abb9c", "fileid": "d165a840e67e7f3a10ca3584a3ed2a4577655539b6830afd11ed3ba2c15003db", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/lmrodriguezr/actions/runs/26506135165" }, { "r": "4.6.0", "os": "win", "version": "3.5.3", "date": "2026-05-27T10:41:30.000Z", "commit": "f0ee9d5563e8b89db0a9ed2d56656e4f271abb9c", "fileid": "d6a74651bad0b1955e9a2a503efff1abd12b9249dc9dc71de7b4aff6229a2de6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/lmrodriguezr/actions/runs/26506135165" } ] }